PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G275600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 482aa    MW: 52960.9 Da    PI: 5.6417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G275600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09293344754
                         HHHHHHHHHHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.as...kapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +          ++ a+iL  A++Y+k+L
  Gorai.001G275600.1 293 MAERRRRKKLNDRLYMLRSVVPKiSKiliVLIMSQMDRASILGDAIDYLKEL 344
                         79*********************6659997888889**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-14283359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256286344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9292350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-7292344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-13293357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-11293348No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVLGAANGLV WMDGEGEEEE DAVSSWTPNI NNQIQSKQDD FTMPFKSVLD AYWYMNPAMN  60
QDPHIRELGF VDNNLLLHHP LDSSASCSPS QPFTLEPHPF LPPKPCFSSL LCNSPFDFAS  120
ETAFQPNQTP NFMGFPPTQF STPDFSSSSD FQGPRLFTAT ENASAFSGGF EGVDASGNAV  180
FVNRAKILKP LEVFPSVGSQ PTLFQKRAAM RQGSGVADER RNLDVSDGKR QRHEQGEIEE  240
ASFDVSGLNY DSDDCKLEEK AKNGGCNSNA TSTLTAGGDH KGKKKGMPAK NLMAERRRRK  300
KLNDRLYMLR SVVPKISKIL IVLIMSQMDR ASILGDAIDY LKELLQRIND LHTELESTPP  360
GSFMPPSSSC HPLTPTPPTL PGRVKEELCP SSFSSPKNQP PKVEVRLREG RAVNIHMPGL  420
LLSTMRALDN LGLDIHQAVI SCFNGFALDV FRAEQCREGQ DVLPEQIKAV LLDSAGFHGI  480
M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282300KKKGMPAKNLMAERRRRKK
2294301ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446513.10.0PREDICTED: transcription factor ICE1-like isoform X1
SwissprotQ9LSE21e-139ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0B0NQC30.0A0A0B0NQC3_G
STRINGVIT_14s0068g01200.t011e-175(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-114bHLH family protein